maybe try doing a compression test just as another thing to add to the list.
If you dont have a compression gauge and the adapter for the duramax, go to the dealer and ask to borrow thiers. They dont use it much and usually will let you have it for a night or over the weekend if you have a good relationship with them.
Remove your front tires and fender liners
Then remove the glowplugs and thread in the adapter and clamp on the compression gauge. The pass side is a breeze, drivers side has a lot of junk in the way.
remove the IGN 1 fuse and have a buddy crank the truck while you read the gauge.
The GM manual says you should let the cylinder compress 6 times.
There should be no more than a 50psi difference between cylinders IIRC it could be less im not 100% sure on that number.
GM states around 400psi is normal but that is a rough number, the biggest thing is that they dont vary fcrom cylinder to cylinder.
Also watch how it ramps up if it builds up slowly and such. Others could add more info to this to determine what is wrong. Im not looking at my manual now and dont remember off the top of my head.
Usually low compression in one cylinder will show up in the balance rates, but all trucks are different.
My #2 cylinder had a balance rate of +8.5 on average. The compression test showed that cylinder 120psi lower than the others. which i later found out to be a really short rod and the rest were all short too. I was running 50psi of boost but a lot of timing and pulse width.
If you do the HGs, to save time just order C gaskets. Youll want these anyways to bump the compression ratio down a few points. Studs are a good idea as the factory bolts will run you a little under $200 for all of them and they arent reusable, the ARP studs initial stretching will wear you out but after that its done and they can be reused again and again. Only bad thing is they find the next weakest link, rods.
and since your in there, you might as well check the injector cups and loctite them again and reinstall them to be safe.
hopefully its something simple.