Could the alternator be sending too much voltage to the pump? When the engine is running 14V is sent to the batteries.
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Thats how Airdog instructs you to hook it up. My cousin has it wired the same way on his LBZ and hes had the same pump since 2010. The only difference in our trucks is his has the PPE pickup in it, and mine is factory. My pump is always louder than his. Its a high pitched whine that you can hear in cab with the truck running.