You might have to relearn the new injectors with a Tech2. From the factory every injector has his own calibration number (written on the plastic part) these numbers are programmed into the ecm, so the ecm knows all 8 flow rates. Now after the injector modification the numbers on the injector dont match the actual flow of the injectors anymore. Exergy told me if you see bad balance rates after putting their overs in, just re-programm the injectors using only one number and the same number for all 8, and it should be better.
http://www.duramaxdiesels.com/forum/showthread.php?t=6285
http://www.duramaxdiesels.com/forum/showthread.php?t=6285
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