After replacing the HVAC module, never had any warning lights, only codes if scanned. In the case of my wife's Malibu, supposedly, the HVAC module is part of the 'global a security ', but it didn't prevent the car from operating normally. Just threw a code about a mismatch if scanned. If you were close to me, I'd hook you up with getting it sorted out, but your area of Michigan to st Louis would be a bit of a haul lol. But I'd image you still have resources in your area.
It's totally stupid... SPS2 can't (won't) change the VIN in a module for no real technical reason... The fact that we can't take a module out of a wrecked vehicle, install it in another and totally reprogram it VIN and all for the target vehicle is so stupid and wasteful.