The simple answer is in how the regulator works.
The fuel quantity or fuel flow is related to how "open" the regulator is, the more closed it is the more AMPS required to limit the fuel flow thru it as it is spring loaded and is normally wide open absent any amps being applied.
Cougar281 and sweetdiesl are correct, the amps vs flow table what you need to adjust.
If you look at LB7 scaling, LLY scaling and LBZ scaling in efi-live tune files you can get an idea of what is needed to "fix" the problem.
Re-read Super Diesel's post as well.
If you log the regulator using these PIDS you will get an idea of what you need to fix.
FRPACOM
FRPCOMM
FRPADES
FRPDES
FRPACT
While Idling and driving, if you see the regulator amps goto ZERO you have too little fuel, so reduce the amps, if you see it overshooting act vs desired rail psi you need to slow fuel down, increase amps.
With a MOATES Road-Runner ECM it takes a few minutes, without it a few hours......
The real challenge is a modded LB7-CP3/LB7 regulator with a modded LBZ-CP3/LBZ regulator as they both need differen't amps to work properly individually but work off of one controller when commanded together, that was a half hour job on on truck with a Road Runner ECM.
Good Luck,