Both ends are balanced. That metal on the hub is put there so it can machined off for balancing the compressor wheel. Compressor wheels are balanced individually so you can swap them.
The turbine shaft is also balanced. Look at the other end.
It depends on if they are sold as components or as a assembly. Garret claims to VSR balance their stuff which means they balance it as a assembly. I wouldn't mix and match those parts without rebalancing it. I have had brand new Garrett's checked for balance and had them be out by quite a bit. BW's stuff is component balanced only.