Well, we got it :woott:
Combination of 3 slightly bent teeth on the crank reluctor and a warped CKP housing causing a phantom sync gap to appear at high rpms, thus causing the injector to attempt to fire twice on the same stroke. Once the computer would see the injector grounding out for its second fire, it would shut them down and go to stall, but since the sensors, signals, and reluctors were essentially ok, it would re synce and fire again, thus causing a "rev limit"
When we first scoped out the crank, and watched it during the "limiter", we saw it wasn't losing signal and not losing it sync pulse, so we ruled it out.
Once I started scoping the injectors I was watching them against the cam pulse and not really seeing much other than injectors firing. So my boss comes over and says to put it against the crank signal. What I wasn't seeing was was the injector not misfiring, but attempting to fire again within the same pulse. We zoom in on the info, and lo and behold, at high rpms the crank signal is developing a "phantom" sync and attempting to fire the injector twice on the same stroke. Paying more attention now, we see some teeth on the crank signal look a littler funny. So I pull the CKP and housing again, and put a straightedge on the opening. Sure as shit 3 teeth are bent ever so slightly off center towards the rear of the engine that missed during my inspections. Probably not a big deal, I'm assuming they had been bent since it was reman'd and it ran fine so far, and the ckp picked up signal and idled fine right? So now I bolt the ckp to the housing in my hands, and damn me if it isn't warped ever so slightly causing the sensor to lift when you tightened up the bolt. Never would see it if it was on the truck when installed. And wouldn't you know, the edge of the sensor face that is lifted, is the back edge where the 3 teeth would "stray" from. So at low rpms, it picked up the signal fine. A little fuzzy around the damaged teeth, but nothing alarming. Once you got the engine revving though, maybe crankcase pressure was lifting the sensor even more and all of sudden, ecm is seeing a second injector pulse gap in the same rotation, attempting to fire again, then realizing it's mistake and trying to stall, but then it would simply fire again normally until the phantom gap appeared again. It wasn't consistently appearing ever revolution either.
Bent the teeth back to center line, and put a shim under the sensor so it stayed straight when bolted down. Fired up the truck, and she took me straight to redline :nanawrench:
I thank you guys for all your help and input. I had every intention of posting pics of the scope images, but in my frustration/excitement/releif, I saved the wrong file and blew it. Sorry. Any questions I'll be happy to discuss.
Oh, and btw. The damn primer still doesn't firm up when pumping lol.