I believe you can do either a VATS re-link or even just disabel the VATS with EFI... Even if just temporary it can be done and undone.
As far as your fuel pressure goes, thats not enough!!!!
If all is true about the story the guy gave you then it sounds as if maybe theres air getting in. Regardless, thats not enough pressure to fire the injectors. When im monitoring a cranking condition I dont see the motor fire until about 900 PSI.
I would say first try to pressurize the tank with about 10-15 PSI of air pressure and see if it starts pushing out fuel anywhere in the fuel system. If fue can get out, then air can be sucked in without effort. If you see no problems then I would move onto a return test to see if maybe its injectors.... Who knows, maybe they were never changed to begine with.
I would almost rule out the CP3 and electronics at this point in the game but they could be a issue further down the road if all the previous checks out.
Hope this helps, let us know.